PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005210t2
Common NameTCM_005210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 326aa    MW: 34883.9 Da    PI: 8.4005
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005210t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.81e-22206268163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkrerrkq+NRe+ArrsR+RK+ae+eeL +kv++L+ eN +L++e+++l+++++kl+ e+
  Thecc1EG005210t2 206 ERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLEN 268
                       89*********************************************************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.4E-17150IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.3E-2867189No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-17199265No hitNo description
SMARTSM003381.1E-20206270IPR004827Basic-leucine zipper domain
PfamPF001704.1E-21206268IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403208271IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.69E-11209264No hitNo description
CDDcd147021.90E-21211260No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPPYYNSAVA SGHAPPPYMW GPPQPMMPPY GAPYATIYSH GGVYAHPAVP LAAATVETPT  60
KSSGNSERGL MKKLKGFDGL AMSIGNGTAE NAEGGPEPRL SQSAETEAST DGSDGNTTGT  120
DQTRRRRSRE GTPTIGGDGK NEAKSNAIVP VGEVTATVSP NSIGTVLSPG MTTALELRNP  180
TTMNAKSSPT SVPCGVMPSE VWLQNERELK RERRKQSNRE SARRSRLRKQ AETEELGRKV  240
ESLTVENATL RSEINQLTEK SEKLRLENAN LVEELKHTQL GQAKEIVMNN KDNKEGEMYE  300
KSSNSGAKLH QLLDASPRAD AVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222228RRSRLRK
2222229RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051640.10.0G-box binding factor 3, putative isoform 2
RefseqXP_007051642.10.0G-box binding factor 3, putative isoform 4
SwissprotQ990891e-116CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A061DTT00.0A0A061DTT0_THECC; G-box binding factor 3, putative isoform 2
TrEMBLA0A061DSN30.0A0A061DSN3_THECC; G-box binding factor 3, putative isoform 4
STRINGPOPTR_0002s16870.11e-141(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.14e-78G-box binding factor 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]